Appion Processing
Terminology
Common Workflow
Processing Cluster Login
Direct Detector Frame Processing
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Gain/Dark correction of the raw frame with or without drift correction
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Catch up DD frame alignment on gpu-capable processing host
CTF Estimation
Particle Selection
Stacks
Convert Stack into Particle Picks
Run DE Particle Frame Alignment
Particle Alignment
Run Alignment
Xmipp Maximum Likelihood Alignment
Spider Reference-free Alignment
IMAGIC Multi Reference Alignment
Spider Reference-based Alignment
Xmipp Reference-based Maximum Likelihood Alignment
Xmipp 3 Clustering 2D Alignment
ISAC Iterative Stable Alignment and Clustering
Run Feature Analysis
Xmipp Kerden Self-Organizing Map
IMAGIC Multivariate Statistical Analysis (MSA)
Xmipp Rotational Kerden Self-Organizing Map
Cluster by Affinity Propogation
Run Particle Clustering
Ab Initio Reconstruction
Refine Reconstruction
Helical Processing
- Manual Helix Picker Feature #1771
