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Test Appion

Test Appion

  • If appion was installed using setup.py you are ready to test out appion.

  • Run the following script to test import of Appion libraries and binaries: cd myami/appion/ ./check.sh

NOTE You can ignore EMAN, MATLAB, and UCSF Chimera errors at this point.   What about: raise LeginonConfigError('set IMAGE_PATH in leginonconfig.py') leginon.leginonconfig.LeginonConfigError: set IMAGE_PATH in leginonconfig.py

You need to edit leginon.cfg.

  • Run the following script to test the installation of 3rd party processing packages: cd myami/appion/test python check3rdPartyPackages.py

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